Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs467049 chr5:94614422 C/T 6.9E-8 174 2.15 16.6 14.6 KM Plot
PAAD rs467144 chr5:94605372 A/G 2.17E-8 178 14.48 18.48 2.15 KM Plot
PAAD rs4716762 chr7:157403939 C/T 5.44E-5 178 15.33 15.67 4.13 KM Plot
PAAD rs4743899 chr9:95935596 A/C 1.96E-5 178 4.62 13.47 15.67 KM Plot
PAAD rs4758113 chr11:5845004 G/A 2.72E-10 178 15.57 11.12 2.2 KM Plot
PAAD rs4764533 chr12:6160744 A/G 3.17E-12 170 1.37 14.73 15.77 KM Plot
PAAD rs4771136 chr13:28070769 C/A 7.82E-7 176 15.27 16.6 3.5 KM Plot
PAAD rs4792312 chr17:12918109 A/G 4.07E-6 176 16.03 15.47 7.77 KM Plot
PAAD rs4802513 chr19:49357656 T/A 1.27E-12 175 16.2 13.13 1.37 KM Plot
PAAD rs4802516 chr19:49366170 T/C 7.3E-13 176 16.28 12.6 1.37 KM Plot
PAAD rs4819275 chr21:48092900 T/C 2.94E-5 177 7.47 15.62 15.5 KM Plot
PAAD rs4836360 chr5:127458161 T/C 0.000152 178 16.17 13.95 7.87 KM Plot
PAAD rs4839007 chr1:114850320 C/A 0 174 0.4 15.63 15.57 KM Plot
PAAD rs4839373 chr1:114847447 T/C 0 174 0.4 15.27 15.57 KM Plot
PAAD rs4839374 chr1:114847551 A/G 0 174 0.4 15.63 15.57 KM Plot